Stochastic and Probabilistic Models in Evolution - IT Assignment Help

Assignment Task

Task
Stochastic processes:
Make a model of the evolution of the genotypic frequencies of a genetic marker with 2 alleles (a SNP) evolving in a panmictic sexual population, an autogamous sexual population and a clonal reproduction population, diploid, non-overlapping generations, finite sizes (N=1000) and submitted to a mutation rate of the order of 1/N, being the size of the adult population. The individuals and reproductive gametes will be systematically drawn at random. For the graph of the evolution of genotypic frequencies over time over 200 generations from an initial population where genotypes are drawn at random. You will calculate and present in table or graph form the Kullback-Leibler divergence (relative entropy) between your simulated predictions in a population only clonal, a population only panmictic, an autogamous-only population and a half-clonal and half autogamous population.

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